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Jul 21, 2022
- Cleaned read cuts output · e1386df6
  Lihouck Flavien authored 2 years ago
  
  e1386df6
Jul 20, 2022
- Fixed another problem with exonerate parser · 73b56147
  Lihouck Flavien authored 2 years ago
  
  73b56147
- Adding comments and fixing bugs on exonerate_parser · 0b00b771
  Lihouck Flavien authored 2 years ago
  
  0b00b771
Jul 19, 2022
- Extracting read regions seems to work · a07d2d16
  Lihouck Flavien authored 2 years ago
  
  a07d2d16
- Added new strategy for concatenation and test data · 40a0400e
  Lihouck Flavien authored 2 years ago
  
  40a0400e
Jul 12, 2022
- Update .gitignore · 717dc76c
  Lihouck Flavien authored 2 years ago
  
  717dc76c
- Delete config_conda.sh · 35479905
  Lihouck Flavien authored 2 years ago
  
  35479905
- Cleaned up parsing and added ref stats · e1e9caac
  Lihouck Flavien authored 2 years ago
  
  e1e9caac
Jul 11, 2022
- Version · fdcaab75
  Lihouck Flavien authored 2 years ago
  
  fdcaab75
- Fixed default values · e765ad48
  Lihouck Flavien authored 2 years ago
  
  e765ad48
- Update README.md · 1500fc37
  Lihouck Flavien authored 2 years ago
  
  1500fc37
Jul 05, 2022
- Fixed the file for pipeline launcher/installer, everything should work now.... · ee47cc40
  Lihouck Flavien authored 2 years ago
  ee47cc40
Jul 04, 2022
- Everything should work now · 822a6f77
  Lihouck Flavien authored 2 years ago
  
  822a6f77
- Update README.md · e06efb74
  Lihouck Flavien authored 2 years ago
  
  e06efb74
- Merge branch 'flihouck-main-patch-62949' into 'main' · a2c01459
  Lihouck Flavien authored 2 years ago
  a2c01459
- Update README.md · 9009408e
  Lihouck Flavien authored 2 years ago
  
  9009408e
- Chmod for mc_msa · 8ab6eb86
  Lihouck Flavien authored 2 years ago
  
  8ab6eb86
- Ajout des scripts de lancement de Pipeline de Coralie, et adaptations de ceux-çi a ce pipeline · 9eaa0830
  Lihouck Flavien authored 2 years ago
  
  9eaa0830
- Added config creation script, fixed consensus · f0e4b35c
  Lihouck Flavien authored 2 years ago
  
  f0e4b35c
Jun 28, 2022
- Looks like I forgot to commit for a while · cdee9e88
  Lihouck Flavien authored 2 years ago
  
  cdee9e88
Jun 09, 2022
- Bugfixes · 7d666158
  Lihouck Flavien authored 2 years ago
  
  7d666158
Jun 07, 2022
- Ajout de la progression du pipeline dans le cas ou l'on a pas de réferences · 970d980c
  Lihouck Flavien authored 2 years ago
  
  970d980c
May 30, 2022
- Pipeline working with references and splitting reads into regions to reduce the memory cost · e42c81a3
  Lihouck Flavien authored 2 years ago
  
  e42c81a3
May 23, 2022
- Cleanup on the repository · 0df69d1c
  Lihouck Flavien authored 3 years ago
  
  0df69d1c
May 17, 2022
- Pipeline working from aligned reads (Step 2 and onwards) · 2815a2ad
  Lihouck Flavien authored 3 years ago
  
  2815a2ad
- Created a first config file · fb13c0ac
  Lihouck Flavien authored 3 years ago
  
  fb13c0ac
May 16, 2022
- Courbes pour les seuils des premiers consensus et second consensus · e4c26ffe
  Lihouck Flavien authored 3 years ago
  
  e4c26ffe
May 13, 2022
- Modification for experimentations on meta-consensus threshold · 8591b276
  Lihouck Flavien authored 3 years ago
  
  8591b276
May 12, 2022
- Ajout d'environnements pour certains outils et modification du pipeline pour tests massifs · ff3f96ca
  Lihouck Flavien authored 3 years ago
  
  ff3f96ca
- Modification de l'algorithme de consensus · b3231ae0
  Lihouck Flavien authored 3 years ago
  
  b3231ae0
May 09, 2022
- Output changed for Snakefile · 5c61a425
  Lihouck Flavien authored 3 years ago
  
  5c61a425
- Base version of pipeline (from MSA to comparison with refs) · 948cadf0
  Lihouck Flavien authored 3 years ago
  
  948cadf0
- Initialisation du dépot · fe59070d
  Lihouck Flavien authored 3 years ago
  
  fe59070d
- Initial commit · 6fc689a3
  Lihouck Flavien authored 3 years ago
  
  6fc689a3