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Pipeline working with references and splitting reads into regions to reduce the memory cost
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- src/workflow/Snakefile 78 additions, 17 deletionssrc/workflow/Snakefile
- src/workflow/envs/minimap2.yaml 12 additions, 0 deletionssrc/workflow/envs/minimap2.yaml
- src/workflow/envs/perl.yaml 10 additions, 0 deletionssrc/workflow/envs/perl.yaml
- src/workflow/scripts/exonerate_stats.sh 1 addition, 1 deletionsrc/workflow/scripts/exonerate_stats.sh
- src/workflow/scripts/plot_results.py 17 additions, 17 deletionssrc/workflow/scripts/plot_results.py
- src/workflow/scripts/reads_map_region.pl 232 additions, 0 deletionssrc/workflow/scripts/reads_map_region.pl
- src/workflow/scripts/region_seq.sh 14 additions, 0 deletionssrc/workflow/scripts/region_seq.sh
- src/workflow/scripts/selected_nb_read.sh 21 additions, 0 deletionssrc/workflow/scripts/selected_nb_read.sh
- src/workflow/test_all.yaml 8 additions, 6 deletionssrc/workflow/test_all.yaml
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