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Unverified Commit ef654309 authored by touzet's avatar touzet Committed by GitHub
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new path for mammal peptide table
parent f859db13
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......@@ -57,10 +57,10 @@ def check_and_update_parameters(spectra, taxonomy, peptide_table, fasta, directo
if mammals :
if not os.path.isfile("Taxonomy/taxonomy_mammals.tsv"):
message.escape("The taxonomy file has been deleted.")
if not os.path.isfile("Peptide_tables/table_mammals_with_deamidation.tsv"):
if not os.path.isfile("Peptide_tables/table_mammals.tsv"):
message.escape("The peptide table file has been deleted.")
taxonomy="Taxonomy/taxonomy_mammals.tsv"
peptide_table=["Peptide_tables/table_mammals_with_deamidation.tsv"]
peptide_table=["Peptide_tables/table_mammals.tsv"]
if taxonomy:
if not os.path.isfile(taxonomy):
......
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