test2.py

test/LutraLutra.fasta

+>XP_047563680.1 OS=Lutra lutra OX=9657 GN=COL1A1
+MFSFVDLRLLLLLAATALLTHGQEEGQEEDIPPVTCVQNGLRYYDRDVWKPEACRICVCDNGNVLCDDVICDETKSCPGAQVPPGECCPVCPDGEASPTDQETAGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGPPGPKGNSGEPGAPGNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPTGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPVGARGPTGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPQVAQKNWYISKNPKEKRHVWYGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGMDIGPVCFL
+>XP_047551750.1 OS=Lutra lutra OX=9657 GN=COL1A2
+MLSFVDTRTLLLLAVTSCLATCQSLQEETARKGPAGDRGPRGERGPPGPPGRDGDDGIPGPPGPPGPPGPPGLGGNFAAQYDPGKGVGLGPGPMGLMGPRGPPGASGAPGPQGFQGPAGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGVSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGADGRAGVMGPPGPRGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGAPGNTGPAGKEGPMGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKPGEKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGLPGEFGLPGPAGPRGERGPPGESGAAGPSGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGPSGPGGLPGERGAAGVPGGKGEKGETGLRGEVGNPGRDGARGAPGAVGAPGPAGATGDRGEAGPAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPVGSAGPSGPNGPPGPAGSRGDGGPPGATGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGLRGPRGDQGPVGRTGETGAHGPPGFAGEKGPSGEPGTAGPPGTSGPQGLLGAPGILGLPGSRGERGLPGVSGSVGEPGPLGIAGPPGARGPPGAVGAPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAVGAPGPHGPVGPTGKHGNRGEPGPAGSVGPVGAAGPRGPSGPQGVRGDKGEPGDKGPRGLPGLKGHNGLQGLPGLAGQHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPVKNWYRNSKVKKHTWLGETINGGTQFEYNTEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLADGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGGADQEFRVDVGPVCFK

test/limit.txt

+GN= COL1A1
\ No newline at end of file

test/murine.fasta

+>NP_031768.2 OS=Mus musculus OX=10090 GN=COL1A1 
+MFSFVDLRLLLLLGATALLTHGQEDIPEVSCIHNGLRVPNGETWKPEVCLICICHNGTAVCDDVQCNEELDCPNPQRREGECCAFCPEEYVSPNSEDVGVEGPKGDPGPQGPRGPVGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFASQMSYGYDEKSAGVSVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGGSGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGPPGTAGARGNDGAVGAAGPPGPTGPTGPPGFPGAVGAKGEAGPQGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGPPGPKGNSGEPGAPGNKGDTGAKGEPGATGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPSGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPAGPPGARGQAGVMGFPGPKGTAGEPGKAGERGLPGPPGAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGNNGAPGNDGAKGDTGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGARGLTGPIGPPGPAGAPGDKGEAGPSGPPGPTGARGAPGDRGEAGPPGPAGFAGPPGADGQPGAKGEPGDTGVKGDAGPPGPAGPAGPPGPIGNVGAPGPKGPRGAAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGSPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGSSGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPAGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGSPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPGPPSGGYDFSFLPQPPQEKSQDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVYCNMETGQTCVFPTQPSVPQKNWYISPNPKEKKHVWFGESMTDGFPFEYGSEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIELRGEGNSRFTYSTLVDGCTSHTGTWGKTVIEYKTTKTSRLPIIDVAPLDIGAPDQEFGLDIGPACFV
+>NP_031769.2 OS=Mus musculus OX=10090 GN=COL1A2
+MLSFVDTRTLLLLAVTSCLATCQYLQSGSVRKGPTGDRGPRGQRGPAGPRGRDGVDGPMGPPGPPGSPGPPGSPAPPGLTGNFAAQYSDKGVSSGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGPRGPAGSPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGVKGHSGMDGLKGQPGAQGVKGEPGAPGENGTPGQAGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNPGTNGLTGAKGATGLPGVAGAPGLPGPRGIPGPAGAAGATGARGLVGEPGPAGSKGESGNKGEPGSVGAQGPPGPSGEEGKRGSPGEAGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAGIRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPSGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGKPGERGHPGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTTGEVGKPGERGLPGEFGLPGPAGPRGERGTPGESGAAGPSGPIGSRGPSGAPGPDGNKGEAGAVGAPGSAGASGPGGLPGERGAAGIPGGKGEKGETGLRGDTGNTGRDGARGIPGAVGAPGPAGASGDRGEAGAAGPSGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGEKGTKGPKGENGIVGPTGSVGAAGPSGPNGPPGPVGSRGDGGPPGMTGFPGAAGRTGPPGPSGIAGPPGPPGAAGKEGIRGPRGDQGPVGRTGETGASGPPGFVGEKGPSGEPGTAGAPGTAGPQGLLGAPGILGLPGSRGERGLPGIAGALGEPGPLGISGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGSIGPTGAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDKGHRGLPGLKGYSGLQGLPGLAGLHGDQGAPGPVGPAGPRGPAGPSGPVGKDGRSGQPGPVGPAGVRGSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGFEGDFYRADQPRSQPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWNSDYYWIDPNQGCTMDAIKVYCDFSTGETCIQAQPVNTPAKNSYSRAQANKHVWLGETINGGSQFEYNVEGVSSKEMATQLAFMRLLANRASQNITYHCKNSIAYLDEETGSLNKAVLLQGSNDVELVAEGNSRFTYSVLVDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFRVEVGPVCFK
+>XP_032768589.1 OS=Rattus rattus OX=10117 GN=COL1A1
+MFSFVDLRLLLLLGATALLTHGQEDIPEVSCIHNGLRVPNGETWKPDVCLICICHNGTAVCDGVLCKEDLDCPNPQRREGECCPFCPEEYVSPDAEVIGVEGPKGDPGPQGPRGPVGPPGQDGIPGQPGLPGPPGPPGPPGPPGLGGNFASQMSYGYDEKSAGVSVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDTGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGPPGSAGARGNDGAVGAAGPPGPTGPTGPPGFPGAAGAKGEAGPQGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPAGPPGARGQAGVMGFPGPKGTAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGNNGAPGNDGAKGDTGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDTGVKGDAGPPGPAGPAGPPGPIGNVGAPGPKGTRGAAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGSPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPAGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGSPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPGPPSGGYDFSFLPQPPQEKSQDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVYCNMETGQTCVFPTQPSVPQKNWYISPNPKEKTHIWFGESMSGGFQFEYGSEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKSLLLQGSNEIELRGEGNSRFTYSTLVDGCTSHTGTWGKTVIEYKTTKTSRLPIIDVAPLDIGAPDQEFGMDVGPACFV
+>XP_032762867.1 OS=Rattus rattus OX=10117 GN=COL1A2
+MLSFVDTRTLLLLAVTSCLATCQSLQMGSVRKGPTGDRGPRGQRGPAGPRGRDGVDGPVGPPGPAGAPGPPGPPGPPGLTGNFAAQYSDKGVSAGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENGTPGQAGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRGIPGPVGAAGATGPRGLVGEPGPAGSKGETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGKPGEKGHPGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTAGEVGKPGERGLPGEFGLPGPAGPRGERGPPGESGAAGPSGPIGSRGPSGAAGPDGNKGEAGAVGAPGSAGASGPGGLPGERGAAGIPGGKGEKGETGLRGEIGNPGRDGARGAPGAIGAPGPAGASGDRGEAGAAGPSGPAGPRGSPGERGEVGPAGPNGFAGPAGSAGQPGAKGEKGTKGPKGENGIVGPTGPVGAAGPSGPNGPPGPAGTRGDGGPPGMTGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGIRGPRGDQGPVGRTGEIGASGPPGFAGEKGPSGEPGTAGPPGTAGPQGLLGAPGILGLPGSRGERGLPGIAGALGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGNIGPTGAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDKGARGLPGLKGHNGLQGLPGLAGLHGDQGAPGPVGPAGPRGPAGPSGPVGKDGRSGHPGPVGPAGVRGSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGFEGDFYRADQPRSQPSLRPKDYEVDATLKSLNNQIETLLTPEGSKKNPARTCRDLRLSHPEWKSDYYWIDPNQGCTMDAIKVYCDFSTGETCIQAQPVNTPAKNAYSRAQANKHVWLGETINGGSQFEYNAEGVSSKEMATQLAFMRLLANRASQNITYHCKNSIAYLDEETGRLNKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWDKTIIEYKTNKPSRLPFLDIAPLDIGGANQEFRVEVGPVCFK
+>NP_445756.1 OS=Rattus norvegicus OX=10116 GN=COL1A1 
+MFSFVDLRLLLLLGATALLTHGQEDIPEVSCIHNGLRVPNGETWKPDVCLICICHNGTAVCDGVLCKEDLDCPNPQKREGECCPFCPEEYVSPDAEVIGVEGPKGDPGPQGPRGPVGPPGQDGIPGQPGLPGPPGPPGPPGPPGLGGNFASQMSYGYDEKSAGVSVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDTGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGPPGSAGARGNDGAVGAAGPPGPTGPTGPPGFPGAAGAKGEAGPQGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPAGPPGARGQAGVMGFPGPKGTAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGNNGAPGNDGAKGDTGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDTGVKGDAGPPGPAGPAGPPGPIGNVGAPGPKGSRGAAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGSPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPAGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGSPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPGPPSGGYDFSFLPQPPQEKSQDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVYCNMETGQTCVFPTQPSVPQKNWYISPNPKEKKHVWFGESMTDGFQFEYGSEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKSLLLQGSNEIELRGEGNSRFTYSTLVDGCTSHTGTWGKTVIEYKTTKTSRLPIIDVAPLDIGAPDQEFGMDIGPACFV
+>NP_445808.2 OS=Rattus norvegicus OX=10116 GN=COL1A2  
+MLSFVDTRTLLLLAVTSCLATCQSLQMGSVRKGPTGDRGPRGQRGPAGPRGRDGVDGPVGPPGPPGAPGPPGPPGPPGLTGNFAAQYSDKGVSAGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENGTPGQAGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEAGLPGLSGPVGPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRGIPGPVGAAGATGPRGLVGEPGPAGSKGETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGKPGEKGHPGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTAGEVGKPGERGLPGEFGLPGPAGPRGERGPPGESGAAGPSGPIGSRGPSGAPGPDGNKGEAGAVGAPGSAGASGPGGLPGERGAAGIPGGKGEKGETGLRGEIGNPGRDGARGAPGAIGAPGPAGASGDRGEAGAAGPSGPAGPRGSPGERGEVGPAGPNGFAGPAGSAGQPGAKGEKGTKGPKGENGIVGPTGPVGAAGPSGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGIRGPRGDQGPVGRTGEIGASGPPGFAGEKGPSGEPGTTGPPGTAGPQGLLGAPGILGLPGSRGERGLPGIAGALGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGNIGPTGAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDKGARGLPGLKGHNGLQGLPGLAGLHGDQGAPGPVGPAGPRGPAGPSGPIGKDGRSGHPGPVGPAGVRGSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGFEGDFYRADQPRSQPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWKSDYYWIDPNQGCTMDAIKVYCDFSTGETCIQAQPVNTPAKNAYSRAQANKHVWLGETINGGSQFEYNAEGVSSKEMATQLAFMRLLANRASQNITYHCKNSIAYLDEETGRLNKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWDKTIIEYKTNKPSRLPFLDIAPLDIGGTNQEFRVEVGPVCFK
+
+

test/result/debug.log

+NP_031768.2 OS=Mus musculus OX=10090 GN=COL1A1
+NP_031769.2 OS=Mus musculus OX=10090 GN=COL1A2
+XP_032768589.1 OS=Rattus rattus OX=10117 GN=COL1A1
+XP_032762867.1 OS=Rattus rattus OX=10117 GN=COL1A2
+NP_445756.1 OS=Rattus norvegicus OX=10116 GN=COL1A1
+NP_445808.2 OS=Rattus norvegicus OX=10116 GN=COL1A2
+constraints:0
+hard sequences:6
+soft sequences:0
+soft constraints:0
+NP_031768.2 OS=Mus musculus OX=10090 GN=COL1A1
+NP_031769.2 OS=Mus musculus OX=10090 GN=COL1A2
+XP_032768589.1 OS=Rattus rattus OX=10117 GN=COL1A1
+XP_032762867.1 OS=Rattus rattus OX=10117 GN=COL1A2
+NP_445756.1 OS=Rattus norvegicus OX=10116 GN=COL1A1
+NP_445808.2 OS=Rattus norvegicus OX=10116 GN=COL1A2
+constraints:0
+hard sequences:6
+soft sequences:0
+soft constraints:0
+No taxonomy provided. Unable to apply TAXONOMY completion.
+NP_031768.2 OS=Mus musculus OX=10090 GN=COL1A1
+NP_031769.2 OS=Mus musculus OX=10090 GN=COL1A2
+XP_032768589.1 OS=Rattus rattus OX=10117 GN=COL1A1
+XP_032762867.1 OS=Rattus rattus OX=10117 GN=COL1A2
+NP_445756.1 OS=Rattus norvegicus OX=10116 GN=COL1A1
+NP_445808.2 OS=Rattus norvegicus OX=10116 GN=COL1A2
+constraints:0
+hard sequences:6
+soft sequences:0
+soft constraints:0
+No taxonomy provided. Unable to apply TAXONOMY completion.
+NP_031768.2 OS=Mus musculus OX=10090 GN=COL1A1
+NP_031769.2 OS=Mus musculus OX=10090 GN=COL1A2
+XP_032768589.1 OS=Rattus rattus OX=10117 GN=COL1A1
+XP_032762867.1 OS=Rattus rattus OX=10117 GN=COL1A2
+NP_445756.1 OS=Rattus norvegicus OX=10116 GN=COL1A1
+NP_445808.2 OS=Rattus norvegicus OX=10116 GN=COL1A2
+constraints:0
+hard sequences:6
+soft sequences:0
+soft constraints:0
+No taxonomy provided. Unable to apply TAXONOMY completion.
+No taxonomy provided. Unable to apply TAXONOMY completion.
+File test/table_mouse_ABC.tsv, line 5: wrong mass, 1592,8. Ignored.
+NP_031768.2 OS=Mus musculus OX=10090 GN=COL1A1
+NP_031769.2 OS=Mus musculus OX=10090 GN=COL1A2
+XP_032768589.1 OS=Rattus rattus OX=10117 GN=COL1A1
+XP_032762867.1 OS=Rattus rattus OX=10117 GN=COL1A2
+NP_445756.1 OS=Rattus norvegicus OX=10116 GN=COL1A1
+NP_445808.2 OS=Rattus norvegicus OX=10116 GN=COL1A2
+constraints:0
+hard sequences:6
+soft sequences:0
+soft constraints:0
+No taxonomy provided. Unable to apply TAXONOMY completion.
+File test/table_mouse_ABC.tsv, line 5: wrong mass, 1592,8. Ignored.
+NP_031768.2 OS=Mus musculus OX=10090 GN=COL1A1
+NP_031769.2 OS=Mus musculus OX=10090 GN=COL1A2
+XP_032768589.1 OS=Rattus rattus OX=10117 GN=COL1A1
+XP_032762867.1 OS=Rattus rattus OX=10117 GN=COL1A2
+NP_445756.1 OS=Rattus norvegicus OX=10116 GN=COL1A1
+NP_445808.2 OS=Rattus norvegicus OX=10116 GN=COL1A2
+constraints:0
+hard sequences:6
+soft sequences:0
+soft constraints:0
+File test/table_mouse_ABC.tsv, line 5: wrong mass, 1592,8. Ignored.
+NP_031768.2 OS=Mus musculus OX=10090 GN=COL1A1
+NP_031769.2 OS=Mus musculus OX=10090 GN=COL1A2
+XP_032768589.1 OS=Rattus rattus OX=10117 GN=COL1A1
+XP_032762867.1 OS=Rattus rattus OX=10117 GN=COL1A2
+NP_445756.1 OS=Rattus norvegicus OX=10116 GN=COL1A1
+NP_445808.2 OS=Rattus norvegicus OX=10116 GN=COL1A2
+constraints:0
+hard sequences:6
+soft sequences:0
+soft constraints:0
+No taxonomy provided. Unable to apply TAXONOMY completion.
+File test/table_mouse_ABC.tsv, line 5: wrong mass, 1592,8. Ignored.
+NP_031768.2 OS=Mus musculus OX=10090 GN=COL1A1
+NP_031769.2 OS=Mus musculus OX=10090 GN=COL1A2
+XP_032768589.1 OS=Rattus rattus OX=10117 GN=COL1A1
+XP_032762867.1 OS=Rattus rattus OX=10117 GN=COL1A2
+NP_445756.1 OS=Rattus norvegicus OX=10116 GN=COL1A1
+NP_445808.2 OS=Rattus norvegicus OX=10116 GN=COL1A2
+constraints:0
+hard sequences:6
+soft sequences:0
+soft constraints:0

test/result/output_P2.tsv

+Taxon name	Marker	Sequence	Mass	PTM	Hel	Length	Gene	Digestion
+Mus musculus	P2	GSPGEAGSAGPAGPPGLR	1566.75067512066	2H	292	18	COL1A2	Yes

test/result/output_dog_G.tsv

+Taxon name	Marker	Sequence	PTM	Mass
+Canis lupus	G	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	4H	2983.51195568482
+Canis lupus	G	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	4H1D	2984.49597168482
+Canis lupus	G	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	5H	2999.5
+Canis lupus	G	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	5H1D	3000.49088668482

test/result/output_mouse_ABC.tsv

+Taxon name	Marker	Sequence	Mass	PTM	Hel	Gene	SeqID	Begin	End
+Mus musculus	A	SGQPGPVGPAGVR	1178.62764612314	0H	978	COL1A2	NP_031769.2	1074	1086
+Mus musculus	A	SGQPGPVGPAGVR	1194.62256112314	1H	978	COL1A2	NP_031769.2	1074	1086
+Mus musculus	B	GLPGEFGLPGPAGPR	1453.74340491225	2H	484	COL1A2	NP_031769.2	580	594
+Mus musculus	C	GEPGPAGSVGPVGAVGPR	1592.8027106935199	2H	889	COL1A2	NP_031769.2	985	1002
+Mus musculus	C	GATGLPGVAGAPGLPGPR	1592.83909658268	3H	220	COL1A2	NP_031769.2	316	333

test/result/report_output_P2.txt

+============================================
+
+                PAMPA CRAFT
+
+============================================
+
+Fri Mar 21 13:30:02 2025
+
+---------------------------------
+   PARAMETERS
+---------------------------------
+
+Incomplete fields
+{'Sequence', 'End', 'PTM', 'SeqID', 'Begin', 'Mass', 'GN', 'Hel'}

test/result/report_output_dog_G.txt

+============================================
+
+                PAMPA CRAFT
+
+============================================
+
+Fri Mar 21 13:29:56 2025
+
+---------------------------------
+   PARAMETERS
+---------------------------------
+
+Incomplete fields
+{'Mass'}
+  Mode : SUPPLEMENT
+
+---------------------------------
+   INPUT PEPTIDE TABLE
+---------------------------------
+['test/table_dog_G.tsv']
+
+---------------------------------
+   WARNINGS
+---------------------------------
+
+  Warnings were raised regarding your inputs.
+
+  - No taxonomy provided. Unable to apply TAXONOMY completion.
+
+
+---------------------------------
+   OUTPUT FILES
+---------------------------------
+
+  Main result file (TSV)   : output_dog_G.tsv
+  Report (this file)       : report_output_dog_G.txt

test/result/report_output_mouse_ABC.txt

+============================================
+
+                PAMPA CRAFT
+
+============================================
+
+Fri Mar 21 13:30:38 2025
+
+---------------------------------
+   PARAMETERS
+---------------------------------
+
+Incomplete fields
+{'End', 'GN', 'Mass', 'Begin', 'PTM', 'Hel', 'Sequence', 'SeqID'}

test/result/report_table_LutraLutra.txt

+============================================
+
+                PAMPA CRAFT
+
+============================================
+
+Tue Mar 18 16:14:51 2025
+
+---------------------------------
+   PARAMETERS
+---------------------------------
+
+Helical start168 / start674
+Helical start168 / start752
+Helical start168 / start752
+Helical start168 / start674
+Helical start168 / start752
+Helical start168 / start752
+Helical start97 / start579
+Helical start97 / start852
+Helical start97 / start852
+Helical start97 / start597
+Helical start168 / start674
+Helical start168 / start752
+Helical start168 / start752
+Helical start97 / start579
+Helical start97 / start597
+Helical start97 / start852
+Helical start97 / start852
+Helical start97 / start579
+Helical start97 / start597
+Helical start97 / start852
+Helical start97 / start852
+  Mode : HOMOLOGY
+  Input peptide table:
+---------------------------------
+ NEW PEPTIDE TABLE
+---------------------------------
+
+Total number of species: 1
+
+
+Gene : COL1A1
+           		COL1A1-508/P1 - 1H	COL1A1-586/F - 2H	COL1A1-586/F - 3H
+Meles meles				
+
+Gene : COL1A2
+           		COL1A2-292/P2 - 2H	COL1A2-484/B - 2H	COL1A2-502/C - 1H	COL1A2-757/G - 4H	COL1A2-757/G - 5H	COL1A2-793/D - 3H	COL1A2-978/A - 0H	COL1A2-978/A - 1H
+Meles meles									
+
+---------------------------------
+  UNDISTINGUISHABLE SPECIES
+---------------------------------
+
+  None
+
+---------------------------------
+  INCLUSION OF SPECIES
+---------------------------------
+
+  None
+
+
+---------------------------------
+   OUTPUT FILES
+---------------------------------
+
+  Main result file (TSV)   : table_LutraLutra.tsv
+  Report (this file)       : report_table_LutraLutra.txt

test/result/table_LutraLutra.tsv

+Rank	TaxID	Taxon name	Sequence	PTM	Mass	Marker	Gene	Hel	Length	SeqID	Begin	End	Status	Comment	Digestion
+species	10090	Mus musculus	GVQGPPGPAGPR	1H	1105.57488265473	COL1A1-508/P1	COL1A1	508	12	NP_031768.2	675	686	Genetic	Homology : R - peptide - G, exact match. 	Yes
+species	10090	Mus musculus	GLPGEFGLPGPAGPR	2H	1453.74340491225	COL1A2-484/B	COL1A2	484	15	NP_031769.2	580	594	Genetic	Homology : R - peptide - G, exact match. 	Yes
+species	10090	Mus musculus	GTPGESGAAGPSGPIGSR	1H	1570.74558935978	COL1A2-502/C	COL1A2	502	18	NP_031769.2	598	615	Genetic	Homology : R - peptide - G, 1 mismatch with GPPGESGAAGPSGPIGSR. 	Yes
+species	10090	Mus musculus	GLTGPIGPPGPAGAPGDKGEAGPSGPPGPTGAR	2H	2879.428225299979	COL1A1-586/F	COL1A1	586	33	NP_031768.2	753	785	Genetic	Homology : R - peptide - G, 1 mismatch with GLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGAR. 	Yes
+species	10090	Mus musculus	GLTGPIGPPGPAGAPGDKGEAGPSGPPGPTGAR	3H	2895.4231402999794	COL1A1-586/F	COL1A1	586	33	NP_031768.2	753	785	Genetic	Homology : R - peptide - G, 1 mismatch with GLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGAR. 	Yes
+species	10090	Mus musculus	GPSGEPGTAGAPGTAGPQGLLGAPGILGLPGSR	4H	2931.4806555565397	COL1A2-757/G	COL1A2	757	33	NP_031769.2	853	885	Genetic	Homology : K - peptide - G, 3 mismatches with GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSR. 	Yes
+species	10090	Mus musculus	GPSGEPGTAGAPGTAGPQGLLGAPGILGLPGSR	5H	2947.47557055654	COL1A2-757/G	COL1A2	757	33	NP_031769.2	853	885	Genetic	Homology : K - peptide - G, 3 mismatches with GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSR. 	Yes
+species	10116	Rattus norvegicus	GVQGPPGPAGPR	1H	1105.57488265473	COL1A1-508/P1	COL1A1	508	12	NP_445756.1	675	686	Genetic	Homology : R - peptide - G, exact match. 	Yes
+species	10116	Rattus norvegicus	GLPGEFGLPGPAGPR	2H	1453.74340491225	COL1A2-484/B	COL1A2	484	15	NP_445808.2	580	594	Genetic	Homology : R - peptide - G, exact match. 	Yes
+species	10116	Rattus norvegicus	GPPGESGAAGPSGPIGSR	1H	1566.75067474022	COL1A2-502/C	COL1A2	502	18	NP_445808.2	598	615	Genetic	Homology : R - peptide - G, exact match. 	Yes
+species	10116	Rattus norvegicus	GLTGPIGPPGPAGAPGDKGETGPSGPAGPTGAR	2H	2883.4231399195396	COL1A1-586/F	COL1A1	586	33	NP_445756.1	753	785	Genetic	Homology : R - peptide - G, 1 mismatch with GLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGAR. 	Yes
+species	10116	Rattus norvegicus	GLTGPIGPPGPAGAPGDKGETGPSGPAGPTGAR	3H	2899.41805491954	COL1A1-586/F	COL1A1	586	33	NP_445756.1	753	785	Genetic	Homology : R - peptide - G, 1 mismatch with GLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGAR. 	Yes
+species	10116	Rattus norvegicus	GPSGEPGTTGPPGTAGPQGLLGAPGILGLPGSR	4H	2987.5068703043794	COL1A2-757/G	COL1A2	757	33	NP_445808.2	853	885	Genetic	Homology : K - peptide - G, 3 mismatches with GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSR. 	Yes
+species	10116	Rattus norvegicus	GPSGEPGTTGPPGTAGPQGLLGAPGILGLPGSR	5H	3003.5017853043796	COL1A2-757/G	COL1A2	757	33	NP_445808.2	853	885	Genetic	Homology : K - peptide - G, 3 mismatches with GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSR. 	Yes
+species	10117	Rattus rattus	GVQGPPGPAGPR	1H	1105.57488265473	COL1A1-508/P1	COL1A1	508	12	XP_032768589.1	675	686	Genetic	Homology : R - peptide - G, exact match. 	Yes
+species	10117	Rattus rattus	GLPGEFGLPGPAGPR	2H	1453.74340491225	COL1A2-484/B	COL1A2	484	15	XP_032762867.1	580	594	Genetic	Homology : R - peptide - G, exact match. 	Yes
+species	10117	Rattus rattus	GPPGESGAAGPSGPIGSR	1H	1566.75067474022	COL1A2-502/C	COL1A2	502	18	XP_032762867.1	598	615	Genetic	Homology : R - peptide - G, exact match. 	Yes
+species	10117	Rattus rattus	GLTGPIGPPGPAGAPGDKGETGPSGPAGPTGAR	2H	2883.4231399195396	COL1A1-586/F	COL1A1	586	33	XP_032768589.1	753	785	Genetic	Homology : R - peptide - G, 1 mismatch with GLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGAR. 	Yes
+species	10117	Rattus rattus	GLTGPIGPPGPAGAPGDKGETGPSGPAGPTGAR	3H	2899.41805491954	COL1A1-586/F	COL1A1	586	33	XP_032768589.1	753	785	Genetic	Homology : R - peptide - G, 1 mismatch with GLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGAR. 	Yes
+species	10117	Rattus rattus	GPSGEPGTAGPPGTAGPQGLLGAPGILGLPGSR	4H	2957.4963056206793	COL1A2-757/G	COL1A2	757	33	XP_032762867.1	853	885	Genetic	Homology : K - peptide - G, 2 mismatches with GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSR. 	Yes
+species	10117	Rattus rattus	GPSGEPGTAGPPGTAGPQGLLGAPGILGLPGSR	5H	2973.4912206206795	COL1A2-757/G	COL1A2	757	33	XP_032762867.1	853	885	Genetic	Homology : K - peptide - G, 2 mismatches with GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSR. 	Yes

test/result/test.tsv

+Taxon name	Sequence	PTM	Mass	Marker
+Canis lupus	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	4H	2983.51195568482	G
+Canis lupus	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	4H1D	2984.49597168482	G
+Canis lupus	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	5H	2999.5	G
+Canis lupus	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	5H1D	3000.49088668482	G

test/table_MelesMeles.tsv

+Taxon name	Sequence	PTM	Marker	Gene
+Meles meles	GLPGEFGLPGPAGPR	2H	COL1A2-484/B	COL1A2
+Meles meles	GLPGVSGSVGEPGPLGIAGPPGAR	3H	COL1A2-793/D	COL1A2
+Meles meles	GLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGAR	2H	COL1A1-586/F	COL1A1
+Meles meles	GLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGAR	3H	COL1A1-586/F	COL1A1
+Meles meles	GPNGEAGSTGPSGPPGLR	2H	COL1A2-292/P2	COL1A2
+Meles meles	GPPGESGAAGPSGPIGSR	1H	COL1A2-502/C	COL1A2
+Meles meles	GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSR	4H	COL1A2-757/G	COL1A2
+Meles meles	GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSR	5H	COL1A2-757/G	COL1A2
+Meles meles	GVQGPPGPAGPR	1H	COL1A1-508/P1	COL1A1
+Meles meles	TGHPGTVGPAGIR	0H	COL1A2-978/A	COL1A2
+Meles meles	TGHPGTVGPAGIR	1H	COL1A2-978/A	COL1A2
\ No newline at end of file

test/table_P2.tsv

+Taxon name	Marker	Sequence	Mass	PTM	Hel	Length	Gene	Digestion
+Mus musculus	P2				292	18	COL1A2

test/table_dog_G.tsv

+Taxon	Marker	Sequence	PTM	Mass
+Canis lupus	G	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	5H	2999.5
+Canis lupus	G	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	4H	
+Canis lupus	G	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	5H1D	
+Canis lupus	G	GPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSR	4H1D	
\ No newline at end of file

test/table_mouse_ABC.tsv

+Taxon name	Marker	Sequence	Mass	PTM	Hel	Gene	SeqID	Begin	End
+Mus musculus	A		1178.6			COL1A2
+Mus musculus	A		1194.6			COL1A2
+Mus musculus	B		1453.7			COL1A2
+Mus musculus	C		1592,8          COL1A2
+

test2.py

+import json
+import csv
+
+
+from src import markers
+from src import peptide_table as pt
+from src import config
+from src import utils
+from functools import cmp_to_key, partial
+
+def compare_file(or_markers, out_markers):
+    group = {}
+
+    for or_marker in or_markers:
+        group[or_marker] = []
+        or_data = or_marker.field
+        keys = or_data.keys()
+        print(or_marker)
+        for out_marker in out_markers:
+            out_data = out_marker.field
+
+            results = {}
+            for key in keys:
+
+                if or_data[key] == out_data[key]:
+                    results[key] = True
+                elif key == "Mass":
+                    if round(float(or_data[key]),1) == round(float(out_data[key]),1):
+                        results[key] = True
+                    else:
+                        results[key] = False
+                else:
+                    results[key] = False
+            if all(results.values()):
+                print(results)
+                group[or_marker].append(out_marker)
+
+    return group
+
+
+def generate_json_result(original_path, output_path, outfile_name):
+    JSON_file = open(outfile_name, "w")
+    or_markers, _ = pt.parse_peptide_tables(original_path, None, None, False)
+    out_markers, list_of_headers = pt.parse_peptide_tables(output_path, None, None, False)
+
+    group = compare_file(or_markers, out_markers)
+
+    if not list_of_headers:
+        headers={pt.restitute_field(key) for m in out_markers for key in m.field}
+        list_of_headers=(config.sort_headers(headers))
+    else:
+        list_of_headers=list(map(pt.restitute_field, list_of_headers))
+
+    list_of_headers.append('__modifiedCells')
+
+    reverse_map = {}
+    for orig_marker, out_list in group.items():
+        for out_m in out_list:
+            reverse_map[out_m] = orig_marker
+
+    dicts = []
+    for out_m in out_markers:
+        orig_m = reverse_map.get(out_m, None)
+        status = {}
+        for field, value in out_m.field.items():
+            if orig_m is None:
+                status[field] = 'new'
+            else:
+                if field in orig_m.field:
+                    orig_val = orig_m.field[field]
+                    if field == "Mass":
+                        if orig_val != value:
+                            status[field] = 'modified'
+                        else:
+                            status[field] = 'original'
+                    else:
+                        status[field] = 'modified' if value != orig_val else 'original'
+                else:
+                    status[field] = 'added'
+        out_m.field['__modifiedCells'] = dict(zip(list_of_headers, status.values()))
+        dicts.append(out_m)
+
+    set_of_codes=[m.code() for m in dicts]
+    list_of_codes=config.sort_headers(set_of_codes)
+    dicts.sort(key=cmp_to_key(partial(pt.marker_order, list_of_codes=list_of_codes)))
+
+    result = []
+    for m in dicts:
+        result.append(dict(zip(list_of_headers, m.field.values())))
+    json.dump(result, JSON_file)
+    JSON_file.close()
+
+    return result, list_of_headers
+
+
+
+def read_tsv(file_path):
+    data = []
+    with open(file_path, "r", newline="") as file:
+        reader = csv.DictReader(file, delimiter="\t")
+        headers = reader.fieldnames
+        for row in reader:
+            data.append(row)
+    return data, headers
+
+
+def table_maker(peptide_out, peptide_or, output_file, method):
+    if method == "fillin":
+        dicts, header = generate_json_result(peptide_or, peptide_out, "test.json")
+        header.pop()
+    else :
+        dicts, header = read_tsv(peptide_out[0])
+        print(dicts)
+    html = '''
+        <div id="myGrid" style="height: 500px; margin-bottom: 20px;" class="ag-theme-alpine"></div>
+        <div style="margin-top: 10px;">
+            <button onclick="exportData()">Download Results (.TSV)</button>
+        </div>
+
+        <script src="https://cdn.jsdelivr.net/npm/ag-grid-community/dist/ag-grid-community.min.js"></script>
+        <script type="text/javascript">
+function initGrid() {
+                let gridApi;
+                const outData = '''+ json.dumps(dicts)+'''
+
+                const columnDefs = ''' + json.dumps([{"field": h, "editable": True} for h in header]) + ''';
+
+                const gridOptions = {
+                    theme: agGrid.themeBalham,
+                    rowData: outData,
+                    columnDefs: columnDefs.map(col => ({
+                        ...col,
+                        cellStyle: params => {
+                            const status = params.data.__modifiedCells?.[col.field];
+                            if (status === 'modified') return { backgroundColor: '#ffff00'};
+                            if (status === 'added') return { backgroundColor: '#00ff00'};
+                            if (status === 'new') return { backgroundColor: '#0000ff'};
+
+                            return null;
+                        }
+                    })),
+                    pagination: true,
+                    paginationPageSize: 20,
+                    defaultColDef: {
+                        sortable: true,
+                        filter: true,
+                        resizable: true,
+                        editable: true
+                    },
+                    autoSizeStrategy: {
+                        type: "fitCellContents",
+                    },
+                    onCellValueChanged: function(event) {
+                        console.log('Cell modified:', event);
+                    },
+                };
+
+                function autoSizeAll(skipHeader) {
+                    const allColumnIds = [];
+                    gridApi.getColumns().forEach((column) => {
+                    allColumnIds.push(column.getId());
+                    });
+
+                    gridApi.autoSizeColumns(allColumnIds, skipHeader);
+
+                    gridApi.sizeColumnsToFit();
+                }
+
+                gridApi = agGrid.createGrid(document.querySelector("#myGrid"), gridOptions);
+                window.gridApi = gridApi;
+
+                autoSizeAll(true);
+
+                window.exportData = function() {
+                    gridApi.exportDataAsCsv({
+                        fileName: "result.tsv",
+                        columnSeparator: '\\t'
+                    });
+                };
+            }
+            if(document.readyState === 'loading') {
+                document.addEventListener('DOMContentLoaded', initGrid);
+            } else {
+                initGrid();
+            }
+        </script>
+        <div id="status" style="margin-top: 10px; color: #666;"></div>
+        '''
+
+    with open(output_file, 'w') as f:
+        f.write(html)
+
+table_maker(["test/result/output_mouse_ABC.tsv"], ["test/table_mouse_ABC.tsv"], "test.html", "fillin")
\ No newline at end of file