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Vandamme Léa
IndexKmerToRead
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506fe538
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506fe538
authored
3 years ago
by
Vandamme Léa
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@@ -6,5 +6,17 @@
| | Time | Resource usage | Resource usage (1 k-mer) |
|--- |:-: |:-: |:-: |
| Naive version | 4 seconds | 842 Mo | 0.17 Ko |
| Robin Hood Hashtable
<br/>
& K_mer uint64_t |
FACE WITH TEARS OF JOY |
```😂```
|
```😂```
|
| Robin Hood Hashtable
<br/>
& K_mer uint64_t |
2 seconds | 763 Mo | 0.16 Ko
|
| Delta encoding ||||
## Times for querying the index
### Using phage_5kb_10percent.fa
| | Querying a k-mer | Querying a sequence | Querying a set of sequences |
|--- |:-: |:-: |:-: |
| Naive version | 1 seconds | 0 seconds | 0 seconds |
| Robin Hood Hashtable
<br/>
& K_mer uint64_t | 0 seconds | 0 seconds | 0 seconds |
| Delta encoding ||||
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