config.yaml

read_file: ../Lambda_phage/lambda_1000x_10p.fa
output_folder: ../TESTS/Lambda_10
ref_file: ../Lambda_phage/lambda_virus.fa
region_size: 1000
tool: ['abpoa', 'spoa', 'kalign2', 'kalign3', 'mafft', 'muscle']
threshold_1: [50]
threshold_2: [50]
depth: 30