Sorting in the total output

src/total_data_format.py

@@ -104,8 +104,8 @@ for threshold in files :
 					tab_line=line.split(",")
 					if not (tab_line[0]=="MSA") :
 						msa=tab_line[0]
-						base_pair=tab_line[1]
-						nb_read=tab_line[2]
+						base_pair=int(tab_line[1])
+						nb_read=int(tab_line[2])
 
 						if (base_pair not in data[exp_name][dir]):
 							data[exp_name][dir][base_pair] = {}
@@ -178,10 +178,14 @@ for threshold in files :
 		output_all.write("\n")
 
 		# Writing data
+		bases=sorted(bases)
+		MSA=sorted(MSA)
+		reads=sorted(reads)
+		print(reads,bases,MSA)
 		for base in bases :
 			for read in reads :
-				output_mean.write(base + "," + read + ",")
-				output_all.write(base + "," + read + ",")
+				output_mean.write(str(base) + "," + str(read) + ",")
+				output_all.write(str(base) + "," + str(read) + ",")
 				for exp_name in data["order"]:
 					for dir in data[exp_name]["order"]:
 						if dir == "":